Feb 222012
 

HIT 1.0.1

:: DESCRIPTION

HIT (Haplotype Inference Technique) solves so-called genotype phasing (or haplotype inference) problem. It estimates the haplotypes of a given set of genotypes consisting of SNPs (single nucleotide polymorhisms). It does this by learning a hidden Markov model for the haplotypes using an EM type algorithm.

::DEVELOPER

Mikko Koivisto

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • Java

:: DOWNLOAD

 HIT

:: MORE INFORMATION

Citation

Pasi Rastas, Mikko Koivisto, Heikki Mannila, and Esko Ukkonen:
Phasing genotypes using a hidden Markov model. In: I. Mandoiu and A. Zelikovsky (eds.),
Bioinformatics Algorithms: Techniques and Applications, pp. 373-391, Wiley 2008.

278 views

Sorry, the comment form is closed at this time.