Apr 142016
 

hiddenDomains 2.2

:: DESCRIPTION

hiddenDomains uses a Hidden Markov Model to identify enriched domains in ChIP-seq data. It accepts BAM files for input and can perform an analysis with or without control data. The output is a BED file, ready for the UCSC genome browser, that contains the domains and is color coded according to their posterior probabilities.

::DEVELOPER

hiddenDomains team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux/ MacOsX
  • Perl
  • R

:: DOWNLOAD

 hiddenDomains

:: MORE INFORMATION

Citation

Detecting broad domains and narrow peaks in ChIP-seq data with hiddenDomains.
Starmer J, Magnuson T.
BMC Bioinformatics. 2016 Mar 24;17(1):144. doi: 10.1186/s12859-016-0991-z.

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