HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experiments, which are techniques used to investigate three-dimensional genomic organisation.
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HiCUP: pipeline for mapping and processing Hi-C data.
Wingett S, Ewels P, Furlan-Magaril M, Nagano T, Schoenfelder S, Fraser P, Andrews S.
F1000Res. 2015 Nov 20;4:1310. doi: 10.12688/f1000research.7334.1.