HHomp is a sensitive protein homology detection and classification method of outer membrane proteins (OMP). It uses HMM-HMM-comparison and an integrated beta-barrel prediction method. The output is a list of closest homologs with alignments. HHomp builds a profile HMM from a query sequence and compares it with a database of HMMs representing outer membrane proteins.
:: MORE INFORMATION
Remmert M, Linke D, Lupas AN, Söding J (2009)
HHomp – prediction and classification of outer membrane proteins.
Nucleic Acids Research 37, W446–W451 (Web Server issue). doi:10.1093/nar/gkp325