May 042016
 

Harvest 1.1.2

:: DESCRIPTION

Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial genomes. Harvest includes: Parsnp, a fast core-genome multi-aligner, Gingr, a dynamic visual platform, and harvest-tools, providing both a reference compressed binary archive and format conversion tools.

::DEVELOPER

The University of Maryland Center for Bioinformatics and Computational Biology (CBCB)

:: SCREENSHOTS

Harvest

:: REQUIREMENTS

  • Linux/ MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 Harvest

:: MORE INFORMATION

Citation

Treangen TJ, Ondov BD, Koren S, Phillippy AM.
Rapid Core-Genome Alignment and Visualization for Thousands of Microbial Genomes.”
bioRxiv (2014). doi: http://dx.doi.org/10.1101/007351

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