HapFinder is a method which can find the common longest haplotype under three different settings from a database, which is relevant in the analysis of positive selection in population genetics and also in medical genetics for finding the likely haplotype form carrying the causal allele at the functional polymorphism.
- Linux / Windows/ MacOsX
- R package
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Bioinformatics. 2011 Mar 15;27(6):822-8. doi: 10.1093/bioinformatics/btr007. Epub 2011 Jan 6.
A method for identifying haplotypes carrying the causative allele in positive natural selection and genome-wide association studies.
Ong RT, Liu X, Poh WT, Sim X, Chia KS, Teo YY.