Jan 022015
 

HapCompass 0.7.7

:: DESCRIPTION

HapCompass for polyploid genomes can currently be used to create accurate pairwise SNP phasings.Given a set of aligned sequence reads in a SAM file and a set of variant calls in VCF format, HAPCOMPASS will assemble reads into haplotypes.

::DEVELOPER

The Istrail Laboratory of Brown University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 HapCompass

:: MORE INFORMATION

Citation

HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data.
Aguiar D, Istrail S.
J Comput Biol. 2012 Jun;19(6):577-90. doi: 10.1089/cmb.2012.0084.

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