Feb 252013
 

Hammer 0.2

:: DESCRIPTION

Hammer is a tool for error correction of short read datasets with non-uniform coverage, such as single-cell data. In particular, Hammer does not make any uniformity assumptions on the distribution of the reads along the genome. It is based on a combination of the Hamming graph build from the set of k-mers and a simple probabilistic model for sequencing errors

::DEVELOPER

Paul Medvedev

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 Hammer

:: MORE INFORMATION

Citation

Medvedev, P., Scott, E., Kakaradov, B., Pevzner, P.,
Error correction of high-throughput sequencing datasets with non-uniform coverage,
Bioinformatics (2011) 27 (13): i137-i141.

140 views

Sorry, the comment form is closed at this time.