GWproxy is a software for clustering metagenome short reads. The software incorporates biological knowledge in the clustering process, by means of a list of proteins associated to
each read. These proteins are chosen from a reference proteome database according to their similarity with the given read, as evaluated by BLAST.
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Gianluigi Folino, Fabio Gori, Mike S. M. Jetten, and Elena Marchiori.
Clustering metagenome short reads using weighted proteins.
In Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 7th European Conference, EvoBIO 2009, Tübingen, Germany, April 15-17, 2009, Proceedings, volume 5483 of Lecture Notes in Computer Science, pages 152-163. Springer, 2009.