GUUGle 1.2 – Fast Exact Matching under RNA Base Pairing Rules

GUUGle 1.2

:: DESCRIPTION

GUUGle is a utility for fast exact matching under RNA base pairing rules.RNA secondary structure analysis often requires searching for potential helices in large sequence data. We present a utility program GUUGle that efficiently locates potential helical regions under RNA base pairing rules, which include Watson-Crick as well as G-U pairs. It accepts a target and a query set of sequences, and determines all exact matches under RNA rules between target and query sequences that exceed a specified length.

::DEVELOPER

Wolfgang Gerlach

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GUUGle

:: MORE INFORMATION

Citation

GUUGle: A utility for fast exact matching under RNA base pairing rules
W. Gerlach, R. Giegerich
in Bioinformatics, 22(6), Pages:762-764, 2006

Leave a Reply

Your email address will not be published. Required fields are marked *

 

This site uses Akismet to reduce spam. Learn how your comment data is processed.