Apr 262013
 

growthpred 1.07

:: DESCRIPTION

growthpred predicts the minimum generation time for a bacterial or archaeal organism based on its codon usage bias intensity (CUB). The CUB index is calculated given two input sets of sequences: 1) highly expressed genes 2) other genes. The application runs 1000 bootstraps and outputs the average and the standard deviation of the predictions.

::DEVELOPER

Microbial evolutionary genomics , Institut Pasteur

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • LinuxMatlab

:: DOWNLOAD

  growthpred

:: MORE INFORMATION

Citation:

Vieira-Silva S, Rocha EPC, 2010
The Systemic Imprint of Growth and Its Uses in Ecological (Meta)Genomics.
PLoS Genet 6(1): e1000808. doi:10.1371/journal.pgen.1000808

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