Dec 022012
 

GRASS 0.003

:: DESCRIPTION

GRASS is a generic algorithm for scaffolding next-generation sequencing assemblies.It offers a Mixed-Integer Programming (MIP) formulation of the contig sca olding problem, which com-bines contig order, distance and orientation in a single optimization objective. The resulting optimization problem is solved using an Expectation-Maximization procedure and an uncon-strained binary quadratic programming approximation of the original problem. Please refer to the original manuscript for details.

::DEVELOPER

The Delft Bioinformatics Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 GRASS

:: MORE INFORMATION

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