GraphCrunch is a software tool for network analysis, modeling and alignment. It automates tasks of finding the best fitting model for the network data, pairwise comparisons of networks, alignment of two networks using GRAAL algorithm (a better network alignment algorithm, MI-GRAAL, is also available for download), and provides capabilities of clustering network nodes based on their topological surrounding in the network.
Nataša Pržulj, Imperial College
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GraphCrunch 2: Software tool for network modeling, alignment and clustering.
Kuchaiev O, Stevanović A, Hayes W, Pržulj N.
BMC Bioinformatics. 2011 Jan 19;12:24. doi: 10.1186/1471-2105-12-24.