Dec 272015
 

GR-Align 1.5

:: DESCRIPTION

GR-Align (GRaphlet-based Aligner) is a fast heuristic procedure for aligning/comparing protein structures according to the Contact Map Opverlap maximization (CMO) paradigm. The algorithm is based on a Needleman-Wunch algorithm where the cost for matching two residues is their graphlet degree similarity.

GR-Align packages contains three software: CMap, DCount, and GR-Align:
CMap converts protein structures (.pdb) files into contact map graphs (leda graphs .gw)
DCount computes the graphlet degree signatures (.ndump files) from Contact Maps
GR-Align aligns protein structures (requieres both contact maps and signatures files)

::DEVELOPER

Nataša Pržulj

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GR-Align

:: MORE INFORMATION

Citation:

Bioinformatics. 2014 May 1;30(9):1259-65. doi: 10.1093/bioinformatics/btu020. Epub 2014 Jan 17.
GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.
Malod-Dognin N1, Pržulj N.

38 views

Sorry, the comment form is closed at this time.