GPU-CASSERT is the GPU-based implementation of the CASSERT algorithm for protein 3D structure similarity searching. The algorithm is based on the two-phase alignment of protein structures when matching fragments of compared proteins.
- CUDA C, C++
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J Mol Model. 2014 Feb;20(2):2067. doi: 10.1007/s00894-014-2067-1. Epub 2014 Jan 31.
Parallel implementation of 3D protein structure similarity searches using a GPU and the CUDA.
Mrozek D1, Brożek M, Małysiak-Mrozek B.