gPLINK is a Java program that provides a simple form interface to the more commonly-used PLINK commands (i.e. instead of using the command line options). gPLINK provides menus and dialogs to create valid PLINK commands, executes them, keeps a record of all commands run in a project, keeps track of input and output files, allows annotation of result files and facilitates integration with Haploview.
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Purcell S, Neale B, Todd-Brown K, Thomas L, Ferreira MAR, Bender D, Maller J, Sklar P, de Bakker PIW, Daly MJ & Sham PC (2007)
PLINK: a toolset for whole-genome association and population-based linkage analysis.
American Journal of Human Genetics, 81.