GNUMAP 3.0.2 / GNUMAPS
The GNUMAP (Genomic Next-generation Universal MAPper) is a program designed to accurately map sequence data obtained from next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. Currently, gnumap is designed to be used with the _int.txt data received from the Solexa/Illumina machine.
GNUMAPS is a user-friendly pipeline with a optimized version of GNUMAP. This pipeline supports DNA, RNA, any library type (unstranded or strand-specific reads), single-end, and paired-end, bisulfited sequence reads, and RNA-editing discovery feature. Note that we keep updating this pipeline.
:: MORE INFORMATION
Clement NL, Snell Q, Clement MJ, Hollenhorst PC, Purwar J, Graves BJ, Cairns BR, Johnson WE
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing
Bioinformatics (2010) 26 (1): 38-45.