Jan 312015
 

GMD 0.3.3

:: DESCRIPTION

GMD is an R package to assess the similarity between spatial distributions of read-based sequencing data such as ChIP-seq and RNA-seq. GMD calculates the optimal distance between pairs of normalized signal distributions, optionally sliding one distribution over the other to ‘align’ the distributions. GMD also provides graphical and downstream clustering tools.

::DEVELOPER

Xiaobei Zhao <xiaobei at binf.ku.dk>, Albin Sandelin@The Bioinformatics Centre , University of Copenhagen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX/ Windows
  • R package

:: DOWNLOAD

 GMD

:: MORE INFORMATION

Citation:

Xiaobei Zhao and Albin Sandelin
GMD: measuring the distance between histograms with applications on high-throughput sequencing reads
Bioinformatics (2012) 28 (8): 1164-1165.

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