Mar 022016
 

GlimmerHMM 3.0.4

:: DESCRIPTION

GlimmerHMM is a new gene finder based on a Generalized Hidden Markov Model (GHMM). Although the gene finder conforms to the overall mathematical framework of a GHMM, additionally it incorporates splice site models adapted from the GeneSplicer program and a decision tree adapted from GlimmerM. It also utilizes Interpolated Markov Models for the coding and noncoding models . Currently, GlimmerHMM’s GHMM structure includes introns of each phase, intergenic regions, and four types of exons (initial, internal, final, and single).

::DEVELOPER

the Center for Bioinformatics and Computational Biology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Sun Solaris / Alpha OSF1

:: DOWNLOAD

 GlimmerHMM

:: MORE INFORMATION

GlimmerHMM is OSI Certified Open Source Software .

Citation:

Majoros, W.H., Pertea, M., and Salzberg, S.L. TigrScan and GlimmerHMM: two open-source ab initio eukaryotic gene-finders Bioinformatics 20 2878-2879.

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