Apr 012013
 

GIDetector

:: DESCRIPTION

GIDetector is a software that is used to detect genomic islands in prokaryotic genomes. GIDetector collects prokaryotic genome data from public websites based on users’ specification, analyzes genome features using multiple sources, including embedded third-party software Alien_hunter and REPuter, and predict genomic islands based on our trained models, which are decision-tree based ensemble classifiers.

::DEVELOPER

Che Lab of Bioinformatics at ESU

:: SCREENSHOTS

GIDetector

:: REQUIREMENTS

  • WIndowsJava

:: DOWNLOAD

 GIDetector

:: MORE INFORMATION

Citation

BMC Genomics. 2010 Nov 2;11 Suppl 2:S1. doi: 10.1186/1471-2164-11-S2-S1.
Classification of genomic islands using decision trees and their ensemble algorithms.
Che D, Hockenbury C, Marmelstein R, Rasheed K.

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