GibbsModule – Multispecies de novo Identification of Cis-regulatory Motifs and Modules

GibbsModule

:: DESCRIPTION

GibbsModule is a software for de novo detection of cis-regulatory motifs and modules in eukaryote genomes. GibbsModule models the coexpressed genes within one species as sharing a core cis-regulatory motif and each homologous gene group as sharing a homologous cis-regulatory module (CRM), characterized by a similar composition of motifs.

::DEVELOPER

Zhong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 GibbsModule

:: MORE INFORMATION

Citation

Genome Res. 2008 Aug;18(8):1325-35. Epub 2008 May 15.
Cross-species de novo identification of cis-regulatory modules with GibbsModule: application to gene regulation in embryonic stem cells.
Xie D, Cai J, Chia NY, Ng HH, Zhong S.

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