Nov 082013
 

GH-index

:: DESCRIPTION

GH-index is an R code to use with CNAnorm to calculate G-stat, H-stat and GH index from copy number data derived from low coverage whole genome sequencing data.

::DEVELOPER

the LICP Pre-Cancer Genomics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX / Windows
  • R package
  • Bioconductor
  • CNAnorm

:: DOWNLOAD

 GH-index

:: MORE INFORMATION

Citation

A computational index derived from whole-genome copy number analysis is a novel tool for prognosis in early stage lung squamous cell carcinoma.
Ornella Belvedere, Stefano Berri, Rebecca Chalkley, Caroline Conway, Fabio Barbone, Federica Pisa, Kenneth MacLennan, Catherine Daly, Melissa Alsop, Joanne Morgan, Jessica Menis, Peter Tcherveniakov, Kostas Papagiannopoulos, Pamela Rabbitts, Henry M Wood.
Genomics. 2012 Jan;99(1):18-24. doi: 10.1016/j.ygeno.2011.10.006

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