GeSICA 1.0.2 – Genome Segmentation from Intra-Chromosomal Associations

GeSICA 1.0.2

:: DESCRIPTION

GeSICA is a two-step strategy of segmenting the human genome into detailed genomic organizational units. In the first step, GeSICA calculates Interaction Ratio of each genomic bin to dichotomize the human genome into two types of states. Only the functional-related regions are taken into account in the second step — Markov Cluster Algorithm (MCL). And a number of clusters are thus generated. Finally, three types of files are generated as the output of GeSICA: the Interaction-Ratio wiggle file, the segmentation bed file and the MCL genomic clusters file.

::DEVELOPER

Zhang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 GeSICA

:: MORE INFORMATION

Citation

Liu L, Zhang Y, Feng J, Zheng N, Yin J, Zhang Y.
GeSICA: genome segmentation from intra-chromosomal associations.
BMC Genomics 2012; 13:164.

Leave a Reply

Your email address will not be published. Required fields are marked *

 

This site uses Akismet to reduce spam. Learn how your comment data is processed.