GenRev 1.0.1 – Explore Functional Relevance of Genes in Molecular Networks

GenRev 1.0.1

:: DESCRIPTION

GenRev is a Python software package that identifies subnetworks for a set of genes from a large network. Three algorithms are implemented in GenRev, the Klein-Ravi algorithm for node weighted Steiner tree problem, the limited k-walk algorithm and a heuristic local search algorithm. Each algorithm is implemented in an independent module. Another analysis module is also developed for graph clustering and gene ranking.

::DEVELOPER

Bioinformatics and Systems Medicine Laboratory, Vanderbilt University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 GenRev

:: MORE INFORMATION

Citation

Zheng S, Zhao Z (2012)
GenRev: exploring functional relevance of genes in molecular networks.
Genomics 99(3):183-188.