geneRegulationSimulation (Gene Regulation Simulation Tool) is based on the computational model described in ““Faithful modeling of transient expression and its application to elucidating negative feedback regulation”” with several extensions. It consists of two programs. The first (“net2text”) implements an interface for the user and the second (“model”) performs the simulations and outputs their results.
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Amir Rubinstein, Vyacheslav Gurevich, Zohar Kasulin-Boneh, Lilach Pnueli, Yona Kassir, and Ron Y.Pinter,
“Faithful modeling of transient expression and its application to elucidating negative feedback regulation”,
PNAS April 10, 2007 vol. 104 no. 15 6241-6246