Jun 292013
 

Gene-environment interactions

:: DESCRIPTION

Gene-environment interactions is an R code that perform a GWAS analysis of gene-environnement interactions for imputed SNPs and non-imputed SNPs. Instead of using PLINK to perform the logistic regressions or the generalized linear model, we used the PLINK’s R plug-in function to do it for the non-imputed SNPs. For the imputed SNPs, we completely exceeded PLINK and used R to do the statistical tests. For both imputed and non-imputed SNPs, we used BASH scritping to dispatch the analysis on SGE and then gathers the results after the analysis.

::DEVELOPER

StatGen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • R package

:: DOWNLOAD
 Gene-environment interactions

:: MORE INFORMATION

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