GenCLiP is a literature mining tool that can cluster a list of genes with keywords that are auto-extracted from their up-to-date related literature and then manually curated by the user. GenCLiP can also generate a group of negative control genes and a group of positive control genes for comparing the cluster results with the analyzed genes to filter out un-specific keywords.
ZHongxi Huang, Lab of Bioinformatics Cancer Institute , Southern Medical University
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Bioinformatics. 2014 Apr 23. pii: btu241. [Epub ahead of print]
GenCLiP 2.0: a web server for functional clustering of genes and construction of molecular networks based on free terms.
Wang JH, Zhao LF, Lin P, Su XR, Chen SJ, Huang LQ, Wang HF, Zhang H, Hu ZF, Yao KT, Huang ZX.
BMC Bioinformatics. 2008 Jul 13;9:308.
GenCLiP: a software program for clustering gene lists by literature profiling and constructing gene co-occurrence networks related to custom keywords.
Huang ZX, Tian HY, Hu ZF, Zhou YB, Zhao J, Yao KT.