GEDI-ADMX 1.03 – GEDI for Admixed Populations

GEDI-ADMX 1.03

:: DESCRIPTION

GEDI-ADMX package provides methods for

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local ancestry inference
SNP genotype error detection and correction
imputation of missing genotypes at typed SNPs, and
imputation of genotypes at untyped SNPs
in admixed populations based on whole-genome SNP genotype data and reference haplotype panels for ancestral populations.

::DEVELOPER

Bioinformatics Lab , Computer Science & Engineering Dept. University of Connecticut

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

GEDI-ADMX for linux ; for windows

:: MORE INFORMATION

Citation:

J. Kennedy and I.I. Mandoiu and B. Pasaniuc,
Genotype Error Detection using Hidden Markov Models of Haplotype Diversity,
Journal of Computational Biology 15, pp. 1155-1171, 2008,

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