Jan 182016
 

GapFiller 1.10

:: DESCRIPTION

GapFiller is a stand-alone program for closing gaps within pre-assembled scaffolds. It is unique in offering the possibility to manually control the gapclosure process. By using the distance information of paired-read data, GapFiller seeks to close the gap from each edge in an iterative manner. From a good number of tests we see the program yields excellent results both on bacterial en eukaryotic  datasets. The command-line Perl script and additional files van be downloaded below. The input data is given by pre-assembled scaffold sequences (FASTA) and NGS paired-read data (FASTA or FASTQ).

::DEVELOPER

BaseClear B.V.

: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

GapFiller

:: MORE INFORMATION

Citation

Marten Boetzer and Walter Pirovano
Toward almost closed genomes with GapFiller
Genenome Biology (2012, 13(6):56).

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