Aug 302013
 

FusionQ v.5

:: DESCRIPTION

FusionQ is a novel fusion detection tool based on paired-end RNA-Seq data. This tool can detect gene fusions, construct the structures of chimerical transcripts, and estimate their abundances. This tool employs a new approach, “residual sequence extension”, which extends the short segments of the reads by aggregating their overlapping reads. A list of filters are proposed to control the false-positive rate.

::DEVELOPER

Center for Bioinformatics & Systems Biology, The Methodist Hospital Research Institute.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • boost thread
  • R Package
  • Perl
  • Bowtie, Cufflinks
  • SAMtools

:: DOWNLOAD

 FusionQ

:: MORE INFORMATION

Citation

Liu C, Ma J, Chang C, Zhou X:
FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
BMC Bioinformatics 2013, 14:193 doi:10.1186/1471-2105-14-193

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