Dec 302015
 

FR3D 20120611 / WebFR3D

:: DESCRIPTION

FR3D stands for “Find RNA 3D” and is commonly pronounced “Fred”.  It was developed to find small RNA motifs (two to 20 nucleotides) in PDB files.

WebFR3D is the online version of FR3D, a suite of Matlab programs designed to search RNA 3D structures for user specified queries.

::DEVELOPER

BGSU RNA Bioinformatics Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/ Linux / Mac OsX
  • MATLAB

:: DOWNLOAD

 FR3D

:: MORE INFORMATION

Citation:

Michael Sarver; Craig L. Zirbel; Jesse Stombaugh; Ali Mokdad; Neocles B. Leontis.
FR3D: Finding Local and Composite Recurrent Structural Motifs in RNA 3D Structures,
Journal of Mathematical Biology (2008) 56:215–252.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W50-5. doi: 10.1093/nar/gkr249. Epub 2011 Apr 22.
WebFR3D–a server for finding, aligning and analyzing recurrent RNA 3D motifs.
Petrov AI1, Zirbel CL, Leontis NB.

396 views

Sorry, the comment form is closed at this time.