FoldNucleus is a server to calculate the folding nucleus for RNA molecules with known 3D structures-including pseudoknots, tRNAs, hairpins, and ribozymes-and for protein molecules with known 3D structures, as long as they are smaller than 200 amino acid residues.
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Bioinformatics. 2015 Jun 22. pii: btv369.
FoldNucleus: Web server for the prediction of RNA and protein folding nuclei from their 3D structures.
Pereyaslavets LB, Sokolovsky IV, Galzitskaya OV.