FiToM / xFITOM / jFITOM 201605
FITOM is a computer program for the detection of binding sites in DNA or RNA sequences. It implements several methods described in the literature to compute an approximation of binding affinity for a particular site based on a collection of binding sequences provided by the user.
xFITOM is a fully featured GUI-enabled version of FITOM for Ms-Windows platforms that integrates additional functionality. The program provides an easy to use graphical user interface (GUI) to define all the relevant options for locating binding sites in genetic sequences.
jFITOM is a Java version of FITOM.
- Linux / Windows / MacOsX
- C++ Compiler
:: MORE INFORMATION
Erill, I; O’Neill, M.C.
“A reexamination of information theory-based methods for DNA-binding site identification”
BMC Bioinformatics. 2009 Feb 11;10(1):57
Bhargava, N. & Erill, I. (2010)
“xFITOM: a generic GUI tool to search for transcription factor binding sites”,
Bioinformation 5(2) 49-51