Nov 032015
 

FCMM 2.0.0

:: DESCRIPTION

FCMM is a pipeline for top-k based functional characterization of multiple metagenome samples to infer the major functions as well as their quantitative scores in a comparative metagenomics manner.

::DEVELOPER

the Bioinformatics Laboratory,Konkuk University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • awk (GNU awk 3.1.7)
  • sed (GNU sed 4.2.1)
  • BWA (v0.7.10)
  • DIAMOND (v0.7.8.57)
  • Trimmomatic (v0.33)

:: DOWNLOAD

 FCMM

:: MORE INFORMATION

Citation

FCMM: A comparative metagenomic approach for functional characterization of multiple metagenome samples.
Lee J, Lee HT, Hong WY, Jang E, Kim J.
J Microbiol Methods. 2015 Aug;115:121-8. doi: 10.1016/j.mimet.2015.05.023

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