FASTEH+ / FASTEHPLUS
FASTEHPLUS performs model-free analysis and permutation test(s) of allelic association based on EH and EHPLUS (Zhao et al.2000). It uses marker genotypes from a group of unrelated individuals or a group of cases and a group of controls and employs gene-counting algorithm to estimate haplotype frequencies and output asymptotic and permutation test statistics. As yet it does not handle missing genotypes. Please check for GENECOUNTING program on this site if you wish to use individuals with missing genotypes in your analysis.
:: MORE INFORMATION
Zhao, J. H., Sham, P. C. (2002)
“Faster allelic association analysis using unrelated subjects“.
Human Heredity, 53(1), 36-41.