Apr 242013
 

Fastbreak

:: DESCRIPTION

Fastbreak is a set of python scripts implementing an O(n) algorithm for detecting translocations and other genetic structural variants from aligned mate pair sequence data in SAM/BAM format.

::DEVELOPER

Shmulevich Group

:: SCREENSHOTS

Fastbreak

:: REQUIREMENTS

  • Web Server
  • Tomcat
  • Java

:: DOWNLOAD

 Fastbreak

:: MORE INFORMATION

Citation

EURASIP J Bioinform Syst Biol. 2012 Oct 9;2012(1):15. doi: 10.1186/1687-4153-2012-15.
Fastbreak: a tool for analysis and visualization of structural variations in genomic data.
Bressler R, Lin J, Eakin A, Robinson T, Kreisberg R, Rovira H, Knijnenburg T, Boyle J, Shmulevich I.

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