FAMD (Fingerprint Analysis with Missing Data) is an easy-to-use general-purpose program for dominant fingerprint data handling and analysis (explicitly allowing ambiguities/missing data points) with a graphical user interface, supporting flexible data input and export to a variety of formats. Analysis capabilities include distance-based analysis (trees and PCoA, with graphical 3D viewer), bootstrapping and consensus tree generation, allele frequency estimation, AMOVA, inter-population distances, Shannon’s index.
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Schlüter, P. M. & Harris, S. A., 2006,
Analysis of multilocus fingerprinting data sets containing missing data.
Mol. Ecol. Notes. 6: 569-572.