Feb 162013
 

Ergatis v2r18

:: DESCRIPTION

Ergatis is a web-based utility that is used to create, run, and monitor reusable computational analysis pipelines. It contains pre-built components for common bioinformatics analysis tasks. These components can be arranged graphically to form highly-configurable pipelines. Each analysis component supports multiple output formats, including the Bioinformatic Sequence Markup Language (BSML). The current implementation includes support for data loading into project databases following the CHADO schema, a highly normalized, community-supported schema for storage of biological annotation data.

::DEVELOPER

The Institute for Genome Sciences (IGS)

:: SCREENSHOTS

Ergatis

:: REQUIREMENTS

  • Workflow Engine
  • Sun Grid Engine
  • Web server
  • Perl

:: DOWNLOAD

 Ergatis

:: MORE INFORMATION

Citation

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV.
Ergatis: A web interface and scalable software system for bioinformatics workflows.
Bioinformatics. 2010 Jun 15;26(12).

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