EMRAE (efficient method to recover ancestral events) is a software to reliably predict a wide-range of rearrangement events in the ancestry of a group of species. Using simulated data sets, EMRAE achieves comparable sensitivity but significantly higher specificity when predicting evolutionary events relative to other tools to study
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Journal Paper: H. Zhao, G. Bourque. 2009.
Recovering Genome Rearrangements in the Mammalian Phylogeny.
Genome Res. 19: 934-942.