Apr 242015
 

edgeR 3.10.0 / edgeRun 1.0.9

:: DESCRIPTION

edgeR (empirical analysis of digital gene expression in R) is an R/Bioconductor software package for statistical analysis of replicated count data. Methods are designed for assessing differential expression in comparative RNA-Seq experiments, but are generally applicable to count data from other genome-scale platforms (ChIP-Seq, MeDIP-Seq, Tag-Seq, SAGE-Seq etc).

edgeRun, an R package that implements an unconditional exact test that is a more powerful version of the exact test in edgeR.

::DEVELOPER

WEHI Bioinformatics / edgeRun team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ MacOsX/Windows
  • R package
  • BioConductor

:: DOWNLOAD

 edgeR , edgeRun

:: MORE INFORMATION

Citation

edgeRun: an R package for sensitive, functionally relevant differential expression discovery using an unconditional exact test.
Dimont E, Shi J, Kirchner R, Hide W.
Bioinformatics. 2015 Apr 21. pii: btv209.

Bioinformatics. 2010 Jan 1;26(1):139-40. doi: 10.1093/bioinformatics/btp616. Epub 2009 Nov 11.
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Robinson MD, McCarthy DJ, Smyth GK.

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