ECN (Expression Annotation of Copy Number) is a MATLAB toolbox for plotting gene copy number data (CGH-data) annotated with the expression values of the genes in the same sample. ECN plots the CGH-data annotated with the gene expression data. These plots enable the easy finding of the genes that are both overexpressed and amplicated in the sample. From these plots it is straightforward to select interesting genes and save the copy number value and gene expression value into a text file.
Reija Autio, Sampsa Hautaniemi and Matti Saarela at Computational Systems Biology Research group
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