E-Predict compares observed hybridization patterns with theoretical energy profiles representing different species. We demonstrate the application of the algorithm to viral detection in a set of clinical samples and discuss its relevance to other metagenomic applications.
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Urisman A, Fischer KF, Chiu CY, Kistler AL, Beck S, Wang D, DeRisi JL.
E-Predict: A Computational Strategy for Species Identification Based on Observed DNA Microarray Hybridization Patterns.
Genome Biology 2005, 6:R78