Oct 102014
 

DupliPHY 2.0 / DupliPHY-ML 1.2

:: DESCRIPTION

DupliPHY is a software tool to determine the evolutionary histories of gene families over a phylogenetic tree. Given a set of gene family sizes and a phylogenetic tree DupliPHY will calculate the ancestral family sizes at each internal node within the tree.

DupliPHY-ML is a software tool to determine the evolutionary histories of gene families using maximum likelihood.Given a set of gene family sizes and a phylogenetic tree DupliPHY-ML will calculate the ancestral family sizes at each internal node within the tree, the average number of events per branch, estimates of rates of birth-death and an evolutionary rate for each family.

::DEVELOPER

LOVELL LAB

:: SCREENSHOTS

n/a

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java
:: DOWNLOAD

 DupliPHY / DupliPHY-ML

:: MORE INFORMATION

Citation:

DupliPHY-Web: A web server for DupliPHY and DupliPHY-ML.
Ames RM, Lovell SC.
Bioinformatics. 2014 Oct 7. pii: btu645.

Ames RM, Money D, Ghatge VP, Whelan S and Lovell SC.
Determining the evolutionary history of gene families.
Bioinformatics (2012) 28(1): 48-55.

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