dictyExpress is an interactive, web-based exploratory data analytics application providing access to over 1,000 Dictyostelium gene expression experiments from Baylor College of Medicine. The applications consists of components for data retrieval, selection of individual genes or groups of genes, graphic display of gene expression time courses, Gene Ontology term enrichment analysis, display of gene co-expression networks, hierarchical clustering, and expression profile visualization of selected genes in different experiments. The components are connected such that a change in any one of the components (e.g., selection of a gene subset from the hierarchical clustering dendrogram) can propagate to other components and their associated visualizations.
BioLab , University of Ljubljana
- Any Web Browser
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dictyExpress: a Dictyostelium discoideum gene expression database with an explorative data analysis web-based interface.
Rot G, Parikh A, Curk T, Kuspa A, Shaulsky G, Zupan B.
BMC Bioinformatics. 2009 Aug 25;10:265.