DESHARKY is a Monte Carlo algorithm that finds a metabolic pathway from a target compound by exploring a database of enzymatic reactions. DESHARKY outputs a biochemical route to the host metabolism together with its impact in the cellular context by using mathematical models of the cell resources and metabolism.
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Bioinformatics. 2008 Nov 1;24(21):2554-6. doi: 10.1093/bioinformatics/btn471. Epub 2008 Sep 5.
DESHARKY: automatic design of metabolic pathways for optimal cell growth.
Rodrigo G1, Carrera J, Prather KJ, Jaramillo A.