DBS-PRED predicts the DNA-binding in a protein from their sequence information. Two neighbours of each residue are taken as the input information and using information from known binding sites of proteins, probable binding sites are predicted. Amino acid composition is taken as the input information for the prediction of DNA-binding probability of a protein.
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Analysis and Prediction of DNA-binding proteins and their binding residues based on composition, sequence and structure information.
by Shandar Ahmad, M. Michael Gromiha and Akinori Sarai
Bioinformatics 20 (2004) 477-486