2011 April
- DNALinux VD – A Linux Solution for Bioinformatics
- PlasMapper 2.0 – Web Server for Drawing & Auto-annotating Plasmid Maps
- PlasmaDNA 1.4.2 – PLAsmid MAnipulation program
- Translate.wdgt – DNA/Protein Conversions
- XPlasMap 0.99 – DNA Mapping Program
- Xpression Primer 3.03 – Primer Design tool for Expression Cloning Experiments
- SimVector 4.60 – Draw Vector Maps
- SeqCorator 2.03 – Sequence Editor & Feature Decorator
- NoeClone 3.0 – Molecular Cloning Tool
- ChemicPen 2.6 – Draw 2D Chemical Formulae & Reactions
- WinDrawChem 1.6.2 – Molecule Structure Drawing
- MCDL 20070701 – Java Molecular Viewer/Editor for Chemical Structures
- JMolDraw 0.6 Alpha – 2D Chemical Structure Drawing Program
- JMEMolecularEditor 2010.02 – Java Molecular Editor
- Chemistry 4-D Draw 8.0.2 – Chemical Structure Drawing
- ACD/NMR Processor Academic Edition 12 – Free NMR processing software
- ACD/Column Selector 2010 – Search & Choose Columns
- BKChem 0.14.0-pre2 – Free Chemical Drawing Program
- I-sites 2 – Predict the Local Structure of a Protein
- SCALI – Non-sequential Structure-based Alignment
- PROTEAN – Torsion Space Molecular Simulations
- MASKER – Molecular Surface Area Calculator
- HMMSUM – Structure-based Substitution Matrices
- HMMSTR-CM – Protein Contact Map Prediction
- HMMSTR 20091212 – Protein Secondary Structure Prediction
- SeWeR 3.0 – Sequence Analysis using Web Resources
- Phylodendron 0.8d – Phylogenetic Tree Drawing
- Readseq 2.1.30 – Read & Reformat Biosequences
- BioGridRunner 2002 – Bioinformatics Data Grid Application
- SeqPup 0.9 – Biosequence Editor
- ProSplign 20070709 – Alignment of Proteins against Genomic Sequences
- Ensemble Calc – Script to Compute Equilibrium Concentrations & Free Energy Change
- OligoArrayAux 3.8 – Auxilliary Package for OligoArray
- BRD 4.0 – Bioreactor Design
- MMP 2.1 – Main Metabolic Pathways
- DNA – Puzzle Game of Gene
- DNA Ball 1.5 – PC Game
- DNA2ABC 1.0.1 – Turn DNA Sequences into Musical Sequences
- ABI2FASTA 1.1.2 – ABI to FASTA converter
- Dna-baser ScreenSaver – Free Biology Screen Saver
- Biogenesis 0.8 – Simulate Evolution of Unicellular Organisms
- brscreen – Brainy Screen Savers
- Binary – DNA Sequence Screen Saver
- Relatedness 5.0.8 – Calculates Average Genetic Relatedness
- Kinship 1.3.1 – Maximum Likelihood Tests of Pedigree Relationships
- Game Theory 3.0 – Use of Game Theory in Evolutionary Theory
- Selection 3.2 – Demonstrate Simple Population Genetic Effects of Selection
- Sex Ratios – Demonstrate Fisherian Selection on the Sex Ratio
- Biomorphs 3.5 – Demonstrate Limitations of Selection Acting on Genes
- Is it Chance 1.0 – Is Evolution by Natural Selection “just chance?”
- Bugs 2.0 – Simulate Bacteria-like Organism Growth
- Bio2MIDI 2.1 – Convert DNA or Protein Sequence to MIDI file
- Microbworld screen saver
- VEM – Virtual Electron Microscope
- TOUR OF THE BASICS – Introduce DNA & Genes
- PUS-POPPIN’ FROGS 1.01 – Determine each Frog’s SNP Profile, Test the Drugs Game
- INSIDE THE CELL 3D – ScreenSaver
- 3D CHEMICAL ELEMENTS SCREENSAVER
- Living Cell 3D Screensaver 1.3
- 3D BioMolecula ScreenSaver 1.1 – 3D Models of Biological Molecules
- Alexa Fluor® Selection Guide – Find the Perfect Alexa Fluor® Dye
- 3D Cell Simulation & Stain Tool 2.0 – Learn about the Cell & all its Structures
- 3D Cell 1.0 – Learn Cell & its Structures iPhone Application
- Molecular Probes Screensaver 2 – Fluorescence Images Screensaver
- ArtWonk 4.2 – DNA to MIDI Converter
- ProteinMusic 1.1 – Convert DNA Sequences into Music
- Acyclovir – Screen Saver of Acyclovir
- BacSim – Simulator of Bacterial Growth
- mfloys – Screen Saver Displaying Floys in an Aquarium
- Floys/iFloys/eFloys – Flocking Artificial Life Creatures
- DarwinPond 2005 – Artificial Life Simulation
- SRMA 0.1.15 – Sequence Re-alignment for Next Generation Sequencing
- GenePool 0.9.1 – Analyze SNP Microarray Probe Intensity data & Rank SNPs
- Deciphia – Evaluate Individuals’ Membership in DNA Mixture using Microarrays
- DNAA 0.1.2 – Analysis Package for Short-read Next Generation Sequencing
- DNPTrapper 1.0 – Assembly Editing & Visualization Tool
- MicroTar 0.9.6 – microRNA Target Prediction from RNA Duplexes
- DNA-CHIP CAD – DNA Array Design
- PrimerHunter 1.0.2 – Primer Design for PCR-Based Virus Subtype Identification
- G-POT 1.0 / PRIMER-ILP 1.0 – Multiplex-PCR Primer Set Selection
- DNA-BAR – Select DNA Probes
- GeneSeq 1.0 – LD-based Genotype Calling from Shotgun Sequencing Reads
- GEDI-ADMX 1.03 – GEDI for Admixed Populations
- GEDI 1.03 – Genotype Error Detection & Imputation
- ENT 1.0.2 – Genotype Phasing by Entropy Minimization
- DGE-EM 1.00 – Accurate Estimation of Gene Expression Levels from DGE Sequencing Data
- GEVALT 2.0 – Genotype Analysis
- HaploPool – Estimate Haplotype Frequencies from Genotypes / DNA Pools
- PhyloPed 0.4 – Haplotype Inference in Pedigrees
- SecureGenome 1.0 – Maintain your Genomic Privacy
- MultiPop – Detecte Causal Variants through a Tailored Study Design
- SEQ-EM 1.0 – Estimate Expression Levels of Homologous Genes
- GENE EXPRESSION HERITABILITY – Caculate Gene Expression Heritablity
- XP-CLR 1.0 – Cross-population Composite Likelihood Ratio Test
- RecMin – Identify Ancestral Recombination Event
- HAPMIX v2 – Identify Ancestry Segment
- ANCESTRYMAP 2.0 – Find Skews in Ancestry
- ComSeq – Simulate & Analyze Compressed-sensing Pooling Design Experiments
- top2maya – View 2D Atomic Force microscope Images as 3D Objects
- ViewIt 4.23 – Multidimensional Image Processing Software
- tkImgDip 1.00b0 – Data Image Portal
- Suprim 5.3.1 – Process Electron Microscopy Image
- JavaScope 1.01 – Operate Philips CM200 Microscope & View Digital Images Remotely
- Birdsuite 1.5.5 – Detect & Report SNP genotypes, CNPs
- Argo 2 – Genome Browser
- Alignment Benchmark – Collection of Protein Sequence Alignment Benchmarks
- PREFAB 4.0 – Protein Reference Alignment Database
- SeedMasker – Genome Masking based on High Occurrence Words
- POP -Gap penaltty optimization
- QSCORE – Multiple Alignment Scoring Software
- PILER – Genomic Repeat Analysis Software
- PALS 1.0 – Pairwise Alignment of Long Sequences
- MUSCLE 3.8.31 – Multiple Sequence Alignment
- Evolver – Whole-genome Sequence Evolution Simulator
- TreeChopper 20090606 – Cluster Tree Leaf Nodes According to Phylogenetic Distance
- WigeoN 20101212 – Examine Sequence Conservation
- ChimeraSlayer 20101212 – Chimeric Sequence Detection Utility
- AmosCmp16Spipeline 20090918 – Assemble 16S rRNA Sequencing Reads
- ALLPATHS-LG – Whole Genome Shotgun Assembler
- BicOverlapper 1.4 – Visual Analysis of Gene Expression
- GRate 1.0 – Relative Rate Test for Groups of Taxa Using General DNA Substitution Models in PAUP*
- QuickAlign 1.03 – Alignment editor for Macinthosh computers
- PRAP 2.0b3 – Parsimony & Likelihood Ratchet Analysis with PAUP*
- TreeGraph 2.0.47 – Graphical Editor for Phylogenetic Trees
- PhyDE 0.9971 – Phylogenetic Data Editor
- SeqState 1.4.1 – Primer Design, Sequence Statistics & Indel Coding
- CONUS 1.0 – Exploration of Lightweight Stochastic Context Free Grammars
- SSU-ALIGN 0.1 – Structural Alignment of SSU rRNA Sequences
- HMMER 3.0 – Protein Sequence Homology Search
- AIM 0.82 – Automatic Image Processing for Microarrays
- ROSE 1.3 – Random-model Of Sequence Evolution
- Rococo 2.0 – Reconstruct Ancestral Gene Clusters
- RNAsifter 1.0 – RNA Shape Index Filter
- RNAhybrid 2.1 – Find Minimum Free Energy Hybridisation of RNA
- RNAMovies 2.0.4 – Visualization of RNA Secondary Structure
- pknotsRG 1.3 – RNA Folding & Thermodynamic Matching
- RNAshapes 2.1.6 – RNA Analysis Package based on Abstract Shapes
- Locomotif – Visual Design of RNA Motifs
- GUUGle 1.2 – Fast Exact Matching under RNA Base Pairing Rules
- TSDA 1.0 – Alignment tool to Analyse Recombinant DNA Sequences
- SWIFT 1.0.1 / BALSAM 1.3 – Fast Local Alignment Searching
- PoSSuM / PoSSuMsearch 2.0 – Matching of PPSSMs using Enhanced Suffix Arrays
- OMA 1.0 – Optimal Multiple Sequence Alignment
- JPREdictor 1.23 – Predict Cis-regulatory Elements
- Jali 1.3 – Remote Homology Detection for Protein
- DCA 1.1 – Divide-and-Conquer Multiple Sequence Alignment
- ChromA 0.9 – Alignment for Chromatography Mass Spectrometry Data
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