DAPfinder and DAPview
The DAPfinder plug-in for BRB-ArrayTools uses a Fisher’s Z test to compare gene-gene Pearson, Spearman or Kendall correlations between two classes and it provides an option to compare gene-gene mutual information, Pearson, Spearman or Kendall correlations between two classes with a permutation test.
The DAPview plug-in for BRB-ArrayTools helps microarray researchers visualize differences in gene-gene association between two classes of microarray data.
Bioinformatics and Computational Biosciences Branch (BCBB),National Institute of Allergy and Infectious Diseases (NIAID)
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BMC Bioinformatics. 2011 Jul 14;12:286. doi: 10.1186/1471-2105-12-286.
Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview.
Skinner J, Kotliarov Y, Varma S, Mine KL, Yambartsev A, Simon R, Huyen Y, Morgun A.