Jul 082014
 

CytoKavosh 1.1 / Kavosh

:: DESCRIPTION

CytoKavosh is a Cytoscape plug-in which allows discovering network motifs with less memory and CPU time in comparison with other existing tools. CytoKavosh plug-in uses Kavosh algorithm for finding network motifs and is based on counting all k-size sub-graphs of a given network graph (directed or undirected).

Kavosh is a new algorithm for finding network motifs.

::DEVELOPER

Laboratory of Systems Biology & Bioinformatics (LBB)

:: SCREENSHOTS

CytoKavosh

:: REQUIREMENTS

  • Linux/ Windows / MacOsX
  • Java
  • Cytoscape

:: DOWNLOAD

 CytoKavosh , Kavosh

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2009 Oct 4;10:318. doi: 10.1186/1471-2105-10-318.
Kavosh: a new algorithm for finding network motifs.
Kashani ZR1, Ahrabian H, Elahi E, Nowzari-Dalini A, Ansari ES, Asadi S, Mohammadi S, Schreiber F, Masoudi-Nejad A.

PLoS One. 2012;7(8):e43287. doi: 10.1371/journal.pone.0043287. Epub 2012 Aug 29.
CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks.
Masoudi-Nejad A1, Ansariola M, Kashani ZR, Salehzadeh-Yazdi A, Khakabimamaghani S.

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