CummeRbund 2.10.0 – Exploration, Analysis and Visualization of Cufflinks high-throughput RNA-Seq data

CummeRbund 2.10.0

:: DESCRIPTION

CummeRbund is an R package that is designed to aid and simplify the task of analyzing Cufflinks RNA-Seq output.CummeRbund was designed to help simplify the analysis and exploration portion of RNA-Seq data derrived from the output of a differential expression analysis using cuffdiff with the goal of providing fast and intuitive access to your results.

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::DEVELOPER

the Computational Biology group &  the Rinn Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows/MacOsX
  • R package
  • Bioconductor

:: DOWNLOAD

 CummeRbund

:: MORE INFORMATION

Citation

Nat Protoc. 2012 Mar 1;7(3):562-78. doi: 10.1038/nprot.2012.016.
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, Pimentel H, Salzberg SL, Rinn JL, Pachter L.